elastix::EulerStackTransform< TElastix > Class Template Reference

#include <elxEulerStackTransform.h>

Detailed Description

template<typename TElastix>
class elastix::EulerStackTransform< TElastix >

A stack transform based on the itk EulerTransforms.

This transform is a rigid body transformation. Calls to TransformPoint and GetJacobian are redirected to the appropriate sub transform based on the last dimension (time) index.

This transform uses the size, spacing and origin of the last dimension of the fixed image to set the number of sub transforms, the origin of the first transform and the spacing between the transforms.

The parameters used in this class are:

Parameters

Transform: Select this transform as follows:
(Transform "EulerStackTransform")

Scales: the scale factor between the rotations and translations, used in the optimizer.
example: (Scales 200000.0)
example: (Scales 100000.0 60000.0 ... 80000.0)
If only one argument is given, that factor is used for the rotations. If more than one argument is given, then the number of arguments should be equal to the number of parameters: for each parameter its scale factor. If this parameter option is not used, by default the rotations are scaled by a factor of 100000.0. See also the AutomaticScalesEstimation parameter.

AutomaticScalesEstimation: if this parameter is set to "true" the Scales parameter is ignored and the scales are determined automatically.
example: ( AutomaticScalesEstimation "true" )
Default: "false" (for backwards compatibility). Recommended: "true".

CenterOfRotation: an index around which the image is rotated.
example: (CenterOfRotation 128 128)

ComputeZYX: whether the order of rotations is ZYX. Default: "false". When false, the order is ZXY.
This parameter is only relevant for 3D transformation (i.e. when the stack transform is 4D), otherwise it is ignored.

The transform parameters necessary for transformix, additionally defined by this class, are:

Transform Parameters

CenterOfRotationPoint: stores the center of rotation, expressed in world coordinates.
example: (CenterOfRotationPoint 10.555 6.666)

StackSpacing: stores the spacing between the sub transforms.
exanoke: (StackSpacing 1.0)

StackOrigin: stores the origin of the first sub transform.
exanoke: (StackOrigin 0.0)

NumberOfSubTransforms: stores the number of sub transforms.
exanoke: (NumberOfSubTransforms 10)

Todo

It is unsure what happens when one of the image dimensions has length 1.

The center of rotation point is not transformed with the initial transform yet.

Definition at line 81 of file elxEulerStackTransform.h.

Inheritance diagram for elastix::EulerStackTransform< TElastix >:

Public Types
using	CombinationTransformType = typename Superclass2::CombinationTransformType
using	ConstPointer = itk::SmartPointer<const Self>
using	ContinuousIndexType = typename itk::ContinuousIndex<CoordinateType, SpaceDimension>
using	CoordinateType
using	DirectionType = typename FixedImageType::DirectionType
using	EulerTransformPointer = typename EulerTransformType::Pointer
using	EulerTransformType
using	FixedImageType
using	IndexType = typename FixedImageType::IndexType
using	InputPointType = typename EulerTransformType::InputPointType
using	ITKBaseType = typename Superclass2::ITKBaseType
using	MovingImageType
using	ParameterMapType
using	Pointer = itk::SmartPointer<Self>
using	PointType = typename FixedImageType::PointType
using	ReducedDimensionContinuousIndexType = typename itk::ContinuousIndex<CoordinateType, ReducedSpaceDimension>
using	ReducedDimensionDirectionType = typename ReducedDimensionImageType::DirectionType
using	ReducedDimensionEulerTransformPointer = typename ReducedDimensionEulerTransformType::Pointer
using	ReducedDimensionEulerTransformType
using	ReducedDimensionImageType = itk::Image<PixelType, Self::ReducedSpaceDimension>
using	ReducedDimensionIndexType = typename ReducedDimensionRegionType::IndexType
using	ReducedDimensionInputPointType = typename ReducedDimensionEulerTransformType::InputPointType
using	ReducedDimensionOriginType = typename ReducedDimensionImageType::PointType
using	ReducedDimensionOutputVectorType = typename ReducedDimensionEulerTransformType::OutputVectorType
using	ReducedDimensionPointType = typename ReducedDimensionImageType::PointType
using	ReducedDimensionRegionType = itk::ImageRegion<Self::ReducedSpaceDimension>
using	ReducedDimensionSizeType = typename ReducedDimensionImageType::SizeType
using	ReducedDimensionSpacingType = typename ReducedDimensionImageType::SpacingType
using	RegionType = typename FixedImageType::RegionType
using	ScalesType
using	Self = EulerStackTransform
using	SizeType = typename FixedImageType::SizeType
using	SpacingType = typename FixedImageType::SpacingType
using	Superclass1
using	Superclass2 = elx::TransformBase<TElastix>
Public Types inherited from itk::AdvancedCombinationTransform< TScalarType, NDimensions >
using	ConstPointer = SmartPointer<const Self>
using	CurrentTransformConstPointer = typename CurrentTransformType::ConstPointer
using	CurrentTransformInverseTransformBasePointer = typename CurrentTransformType::InverseTransformBasePointer
using	CurrentTransformInverseTransformBaseType = typename CurrentTransformType::InverseTransformBaseType
using	CurrentTransformPointer = typename CurrentTransformType::Pointer
using	CurrentTransformType = Superclass
using	InitialTransformConstPointer = typename InitialTransformType::ConstPointer
using	InitialTransformInverseTransformBasePointer = typename InitialTransformType::InverseTransformBasePointer
using	InitialTransformInverseTransformBaseType = typename InitialTransformType::InverseTransformBaseType
using	InitialTransformPointer = typename InitialTransformType::Pointer
using	InitialTransformType = Superclass
using	InternalMatrixType
using	InverseTransformBaseType = typename Superclass::InverseTransformBaseType
using	JacobianOfSpatialHessianType
using	JacobianOfSpatialJacobianType
using	MovingImageGradientType
using	MovingImageGradientValueType
using	NonZeroJacobianIndicesType
using	Pointer = SmartPointer<Self>
using	Self = AdvancedCombinationTransform
using	SpatialHessianType
using	SpatialJacobianType
using	Superclass = AdvancedTransform<TScalarType, NDimensions, NDimensions>
using	TransformType = typename Superclass::TransformType
using	TransformTypeConstPointer = typename TransformType::ConstPointer
using	TransformTypePointer = typename TransformType::Pointer
Public Types inherited from itk::AdvancedTransform< TScalarType, 3, 3 >
using	ConstPointer
using	InternalMatrixType
using	InverseTransformBaseType
using	JacobianOfSpatialHessianType
using	JacobianOfSpatialJacobianType
using	MovingImageGradientType
using	MovingImageGradientValueType
using	NonZeroJacobianIndicesType
using	Pointer
using	Self
using	SpatialHessianType
using	SpatialJacobianType
using	Superclass
using	TransformType
using	TransformTypeConstPointer
using	TransformTypePointer
Public Types inherited from elastix::TransformBase< TElastix >
using	CombinationTransformType = itk::AdvancedCombinationTransform<CoordinateType, Self::FixedImageDimension>
using	CommandLineArgumentMapType = Configuration ::CommandLineArgumentMapType
using	CommandLineEntryType = Configuration ::CommandLineEntryType
using	ComponentDescriptionType = ComponentDatabase::ComponentDescriptionType
using	CoordinateType = ElastixBase::CoordinateType
using	DeformationFieldImageType = itk::Image<VectorPixelType, FixedImageDimension>
using	FixedImageType = typename TElastix::FixedImageType
using	InitialTransformType = typename CombinationTransformType::InitialTransformType
using	InputPointType = typename ITKBaseType::InputPointType
using	ITKBaseType = CombinationTransformType
using	ITKRegistrationType = typename RegistrationType::ITKBaseType
using	MovingImageType = typename TElastix::MovingImageType
using	OptimizerType = typename ITKRegistrationType::OptimizerType
using	OutputPointType = typename ITKBaseType::OutputPointType
using	ParameterMapType = typename TElastix::ParameterMapType
using	ParametersType = itk::OptimizerParameters<ValueType>
using	PtrToCreator = ComponentDatabase::PtrToCreator
using	RegistrationType
using	ScalesType = itk::Optimizer::ScalesType
using	Self = TransformBase
using	SpatialJacobianDeterminantImageType = itk::Image<float, FixedImageDimension>
using	SpatialJacobianMatrixImageType
using	Superclass = BaseComponentSE<TElastix>
using	ValueType = double
using	VectorPixelType = itk::Vector<float, FixedImageDimension>
Public Types inherited from elastix::BaseComponentSE< TElastix >
using	ElastixType = TElastix
using	RegistrationType = typename ElastixType::RegistrationBaseType
using	Self = BaseComponentSE
using	Superclass = BaseComponent

Public Member Functions
int	BeforeAll () override
void	BeforeRegistration () override
	elxClassNameMacro ("EulerStackTransform")
virtual void	InitialTransformCenter (ReducedDimensionInputPointType &point)
	ITK_DISALLOW_COPY_AND_MOVE (EulerStackTransform)
	itkOverrideGetNameOfClassMacro (EulerStackTransform)
	itkStaticConstMacro (ReducedSpaceDimension, unsigned int, Superclass2::FixedImageDimension - 1)
	itkStaticConstMacro (SpaceDimension, unsigned int, Superclass2::FixedImageDimension)
void	ReadFromFile () override
virtual void	SetScales ()
Public Member Functions inherited from itk::AdvancedCombinationTransform< TScalarType, NDimensions >
void	EvaluateJacobianWithImageGradientProduct (const InputPointType &inputPoint, const MovingImageGradientType &movingImageGradient, DerivativeType &imageJacobian, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override
const FixedParametersType &	GetFixedParameters () const override
bool	GetHasNonZeroSpatialHessian () const override
bool	GetInverse (Self *inverse) const
void	GetJacobian (const InputPointType &inputPoint, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override
void	GetJacobianOfSpatialHessian (const InputPointType &inputPoint, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override
void	GetJacobianOfSpatialHessian (const InputPointType &inputPoint, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override
void	GetJacobianOfSpatialJacobian (const InputPointType &inputPoint, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override
void	GetJacobianOfSpatialJacobian (const InputPointType &inputPoint, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override
const TransformTypePointer	GetNthTransform (SizeValueType n) const
NumberOfParametersType	GetNumberOfNonZeroJacobianIndices () const override
NumberOfParametersType	GetNumberOfParameters () const override
SizeValueType	GetNumberOfTransforms () const
const ParametersType &	GetParameters () const override
void	GetSpatialHessian (const InputPointType &inputPoint, SpatialHessianType &sh) const override
void	GetSpatialJacobian (const InputPointType &inputPoint, SpatialJacobianType &sj) const override
TransformCategoryEnum	GetTransformCategory () const override
virtual bool	GetUseAddition () const
virtual bool	GetUseComposition () const
bool	HasNonZeroJacobianOfSpatialHessian () const
bool	IsLinear () const override
	ITK_DISALLOW_COPY_AND_MOVE (AdvancedCombinationTransform)
	itkGetModifiableObjectMacro (CurrentTransform, CurrentTransformType)
	itkGetModifiableObjectMacro (InitialTransform, InitialTransformType)
	itkOverrideGetNameOfClassMacro (AdvancedCombinationTransform)
	itkStaticConstMacro (SpaceDimension, unsigned int, NDimensions)
void	SetCurrentTransform (CurrentTransformType *_arg)
void	SetFixedParameters (const FixedParametersType &fixedParam) override
void	SetInitialTransform (InitialTransformType *_arg)
void	SetParameters (const ParametersType &param) override
void	SetParametersByValue (const ParametersType &param) override
void	SetUseAddition (bool _arg)
void	SetUseComposition (bool _arg)
OutputCovariantVectorType	TransformCovariantVector (const InputCovariantVectorType &) const override
OutputPointType	TransformPoint (const InputPointType &point) const override
OutputVectorType	TransformVector (const InputVectorType &) const override
OutputVnlVectorType	TransformVector (const InputVnlVectorType &) const override
Public Member Functions inherited from itk::AdvancedTransform< TScalarType, 3, 3 >
void	ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &) const override
virtual bool	GetHasNonZeroJacobianOfSpatialHessian () const
	ITK_DISALLOW_COPY_AND_MOVE (AdvancedTransform)
	itkOverrideGetNameOfClassMacro (AdvancedTransform)
	itkStaticConstMacro (InputSpaceDimension, unsigned int, NInputDimensions)
Public Member Functions inherited from elastix::TransformBase< TElastix >
int	BeforeAllTransformix ()
void	ComputeAndWriteSpatialJacobianDeterminantImage () const
void	ComputeAndWriteSpatialJacobianMatrixImage () const
SpatialJacobianDeterminantImageType::Pointer	ComputeSpatialJacobianDeterminantImage () const
SpatialJacobianMatrixImageType::Pointer	ComputeSpatialJacobianMatrixImage () const
void	CreateTransformParameterMap (const ParametersType &param, ParameterMapType &parameterMap, const bool includeDerivedTransformParameters=true) const
ITKBaseType *	GetAsITKBaseType ()
const ITKBaseType *	GetAsITKBaseType () const
	ITK_DISALLOW_COPY_AND_MOVE (TransformBase)
	itkOverrideGetNameOfClassMacro (TransformBase)
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
void	ReadInitialTransformFromFile (const std::string &transformParameterFileName)
void	SetFinalParameters ()
void	SetInitialTransform (InitialTransformType *_arg)
void	SetReadWriteTransformParameters (const bool _arg)
void	SetTransformParameterFileName (const std::string &filename)
template<typename TMesh>
TMesh::Pointer	TransformMesh (const TMesh &mesh) const
void	TransformPoints () const
void	WriteToFile (std::ostream &transformationParameterInfo, const ParametersType &param) const
Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
void	AddTargetCellToIterationInfo (const char *const name)
const Configuration *	GetConfiguration () const
ElastixType *	GetElastix () const
auto &	GetIterationInfoAt (const char *const name)
itk::Statistics::MersenneTwisterRandomVariateGenerator &	GetRandomVariateGenerator ()
RegistrationType *	GetRegistration () const
	ITK_DISALLOW_COPY_AND_MOVE (BaseComponentSE)
void	RemoveTargetCellFromIterationInfo (const char *const name)
void	SetConfiguration (const Configuration *_arg)
void	SetElastix (ElastixType *_arg)
Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration ()
virtual void	AfterEachIterationBase ()
virtual void	AfterEachResolution ()
virtual void	AfterEachResolutionBase ()
virtual void	AfterRegistration ()
virtual void	BeforeEachResolution ()
virtual void	BeforeEachResolutionBase ()
virtual const char *	elxGetClassName () const
const char *	GetComponentLabel () const
	ITK_DISALLOW_COPY_AND_MOVE (BaseComponent)
	itkVirtualGetNameOfClassMacro (BaseComponent)
void	SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::AdvancedCombinationTransform< TScalarType, NDimensions >
static Pointer	New ()
Static Public Member Functions inherited from elastix::BaseComponent
template<typename TBaseComponent>
static auto	AsITKBaseType (TBaseComponent *const baseComponent) -> decltype(baseComponent->GetAsITKBaseType())
static void	InitializeElastixExecutable ()
static bool	IsElastixLibrary ()

Protected Member Functions
	EulerStackTransform ()
	~EulerStackTransform () override=default
Protected Member Functions inherited from itk::AdvancedCombinationTransform< TScalarType, NDimensions >
	AdvancedCombinationTransform ()
void	EvaluateJacobianWithImageGradientProductNoCurrentTransform (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const
void	EvaluateJacobianWithImageGradientProductNoInitialTransform (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const
void	EvaluateJacobianWithImageGradientProductUseAddition (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const
void	EvaluateJacobianWithImageGradientProductUseComposition (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const
void	GetJacobianNoCurrentTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
void	GetJacobianNoInitialTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
void	GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &inputPoint, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &inputPoint, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &inputPoint, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &inputPoint, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialHessianUseAddition (const InputPointType &inputPoint, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialHessianUseAddition (const InputPointType &inputPoint, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialHessianUseComposition (const InputPointType &inputPoint, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialHessianUseComposition (const InputPointType &inputPoint, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &inputPoint, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &inputPoint, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &inputPoint, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &inputPoint, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianUseAddition (const InputPointType &inputPoint, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianUseAddition (const InputPointType &inputPoint, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianUseComposition (const InputPointType &inputPoint, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianUseComposition (const InputPointType &inputPoint, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianUseAddition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
void	GetJacobianUseComposition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
void	GetSpatialHessianNoCurrentTransform (const InputPointType &inputPoint, SpatialHessianType &sh) const
void	GetSpatialHessianNoInitialTransform (const InputPointType &inputPoint, SpatialHessianType &sh) const
void	GetSpatialHessianUseAddition (const InputPointType &inputPoint, SpatialHessianType &sh) const
void	GetSpatialHessianUseComposition (const InputPointType &inputPoint, SpatialHessianType &sh) const
void	GetSpatialJacobianNoCurrentTransform (const InputPointType &inputPoint, SpatialJacobianType &sj) const
void	GetSpatialJacobianNoInitialTransform (const InputPointType &inputPoint, SpatialJacobianType &sj) const
void	GetSpatialJacobianUseAddition (const InputPointType &inputPoint, SpatialJacobianType &sj) const
void	GetSpatialJacobianUseComposition (const InputPointType &inputPoint, SpatialJacobianType &sj) const
OutputPointType	TransformPointNoCurrentTransform (const InputPointType &point) const
OutputPointType	TransformPointNoInitialTransform (const InputPointType &point) const
OutputPointType	TransformPointUseAddition (const InputPointType &point) const
OutputPointType	TransformPointUseComposition (const InputPointType &point) const
void	UpdateCombinationMethod ()
	~AdvancedCombinationTransform () override=default
Protected Member Functions inherited from itk::AdvancedTransform< TScalarType, 3, 3 >
	AdvancedTransform ()=default
	~AdvancedTransform () override=default
Protected Member Functions inherited from elastix::TransformBase< TElastix >
void	AutomaticScalesEstimation (ScalesType &scales) const
void	AutomaticScalesEstimationStackTransform (const unsigned int numSubTransforms, ScalesType &scales) const
bool	HasITKTransformParameters () const
	TransformBase ()=default
	~TransformBase () override=default
Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()=default
	~BaseComponentSE () override=default
Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()=default
virtual	~BaseComponent ()=default

Private Types
using	StackTransformType = itk::EulerStackTransform<SpaceDimension>

Private Member Functions
ParameterMapType	CreateDerivedTransformParameterMap () const override
unsigned int	InitializeEulerTransform ()
void	InitializeTransform ()
bool	ReadCenterOfRotationPoint (ReducedDimensionInputPointType &rotationPoint) const

Private Attributes
	elxOverrideGetSelfMacro
ReducedDimensionEulerTransformPointer	m_DummySubTransform
unsigned int	m_NumberOfSubTransforms
double	m_StackOrigin
double	m_StackSpacing
const StackTransformType::Pointer	m_StackTransform { StackTransformType::New() }

Additional Inherited Members
Protected Attributes inherited from itk::AdvancedTransform< TScalarType, 3, 3 >
bool	m_HasNonZeroJacobianOfSpatialHessian
bool	m_HasNonZeroSpatialHessian
Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
Configuration::ConstPointer	m_Configuration {}
itk::WeakPointer< TElastix >	m_Elastix {}
RegistrationType *	m_Registration {}

Member Typedef Documentation

CombinationTransformType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::CombinationTransformType = typename Superclass2::CombinationTransformType

Definition at line 141 of file elxEulerStackTransform.h.

ConstPointer

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::ConstPointer = itk::SmartPointer<const Self>

Definition at line 95 of file elxEulerStackTransform.h.

ContinuousIndexType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::ContinuousIndexType = typename itk::ContinuousIndex<CoordinateType, SpaceDimension>

Definition at line 165 of file elxEulerStackTransform.h.

CoordinateType

template<typename TElastix>

using elastix::TransformBase< TElastix >::CoordinateType

Elastix typedef's.

Definition at line 163 of file elxTransformBase.h.

DirectionType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::DirectionType = typename FixedImageType::DirectionType

Definition at line 163 of file elxEulerStackTransform.h.

EulerTransformPointer

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::EulerTransformPointer = typename EulerTransformType::Pointer

Definition at line 118 of file elxEulerStackTransform.h.

EulerTransformType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::EulerTransformType

Initial value:

 
    itk::EulerTransform<typename elx::TransformBase<TElastix>::CoordinateType, Self::SpaceDimension>

The ITK-class that provides most of the functionality, and that is set as the "CurrentTransform" in the CombinationTransform.

Definition at line 116 of file elxEulerStackTransform.h.

FixedImageType

template<typename TElastix>

using elastix::TransformBase< TElastix >::FixedImageType

Definition at line 164 of file elxTransformBase.h.

IndexType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::IndexType = typename FixedImageType::IndexType

Other typedef's.

Definition at line 158 of file elxEulerStackTransform.h.

InputPointType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::InputPointType = typename EulerTransformType::InputPointType

Definition at line 119 of file elxEulerStackTransform.h.

ITKBaseType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::ITKBaseType = typename Superclass2::ITKBaseType

Definition at line 140 of file elxEulerStackTransform.h.

MovingImageType

template<typename TElastix>

using elastix::TransformBase< TElastix >::MovingImageType

Definition at line 165 of file elxTransformBase.h.

ParameterMapType

template<typename TElastix>

using elastix::TransformBase< TElastix >::ParameterMapType

Typedef that is used in the elastix dll version.

Definition at line 206 of file elxTransformBase.h.

Pointer

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::Pointer = itk::SmartPointer<Self>

Definition at line 94 of file elxEulerStackTransform.h.

PointType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::PointType = typename FixedImageType::PointType

Definition at line 160 of file elxEulerStackTransform.h.

ReducedDimensionContinuousIndexType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::ReducedDimensionContinuousIndexType = typename itk::ContinuousIndex<CoordinateType, ReducedSpaceDimension>

Definition at line 164 of file elxEulerStackTransform.h.

ReducedDimensionDirectionType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::ReducedDimensionDirectionType = typename ReducedDimensionImageType::DirectionType

Definition at line 151 of file elxEulerStackTransform.h.

ReducedDimensionEulerTransformPointer

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::ReducedDimensionEulerTransformPointer = typename ReducedDimensionEulerTransformType::Pointer

Definition at line 124 of file elxEulerStackTransform.h.

ReducedDimensionEulerTransformType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::ReducedDimensionEulerTransformType

Initial value:

 
    itk::EulerTransform<typename elx::TransformBase<TElastix>::CoordinateType, Self::ReducedSpaceDimension>

The ITK-class for the sub transforms, which have a reduced dimension.

Definition at line 122 of file elxEulerStackTransform.h.

ReducedDimensionImageType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::ReducedDimensionImageType = itk::Image<PixelType, Self::ReducedSpaceDimension>

Definition at line 145 of file elxEulerStackTransform.h.

ReducedDimensionIndexType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::ReducedDimensionIndexType = typename ReducedDimensionRegionType::IndexType

Definition at line 149 of file elxEulerStackTransform.h.

ReducedDimensionInputPointType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::ReducedDimensionInputPointType = typename ReducedDimensionEulerTransformType::InputPointType

Definition at line 127 of file elxEulerStackTransform.h.

ReducedDimensionOriginType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::ReducedDimensionOriginType = typename ReducedDimensionImageType::PointType

Definition at line 152 of file elxEulerStackTransform.h.

ReducedDimensionOutputVectorType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::ReducedDimensionOutputVectorType = typename ReducedDimensionEulerTransformType::OutputVectorType

Definition at line 126 of file elxEulerStackTransform.h.

ReducedDimensionPointType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::ReducedDimensionPointType = typename ReducedDimensionImageType::PointType

Definition at line 147 of file elxEulerStackTransform.h.

ReducedDimensionRegionType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::ReducedDimensionRegionType = itk::ImageRegion<Self::ReducedSpaceDimension>

Definition at line 146 of file elxEulerStackTransform.h.

ReducedDimensionSizeType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::ReducedDimensionSizeType = typename ReducedDimensionImageType::SizeType

Definition at line 148 of file elxEulerStackTransform.h.

ReducedDimensionSpacingType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::ReducedDimensionSpacingType = typename ReducedDimensionImageType::SpacingType

Definition at line 150 of file elxEulerStackTransform.h.

RegionType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::RegionType = typename FixedImageType::RegionType

Definition at line 162 of file elxEulerStackTransform.h.

ScalesType

template<typename TElastix>

using elastix::TransformBase< TElastix >::ScalesType

Definition at line 197 of file elxTransformBase.h.

Self

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::Self = EulerStackTransform

Standard ITK-stuff.

Definition at line 90 of file elxEulerStackTransform.h.

SizeType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::SizeType = typename FixedImageType::SizeType

Definition at line 159 of file elxEulerStackTransform.h.

SpacingType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::SpacingType = typename FixedImageType::SpacingType

Definition at line 161 of file elxEulerStackTransform.h.

StackTransformType

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::StackTransformType = itk::EulerStackTransform<SpaceDimension>

private

The deleted copy constructor and assignment operator. Typedef for stack transform.

Definition at line 226 of file elxEulerStackTransform.h.

Superclass1

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::Superclass1

Initial value:

 itk::AdvancedCombinationTransform<typename elx::TransformBase<TElastix>::CoordinateType,
                                                        elx::TransformBase<TElastix>::FixedImageDimension>

Definition at line 91 of file elxEulerStackTransform.h.

Superclass2

template<typename TElastix>

using elastix::EulerStackTransform< TElastix >::Superclass2 = elx::TransformBase<TElastix>

Definition at line 93 of file elxEulerStackTransform.h.

Constructor & Destructor Documentation

EulerStackTransform()

template<typename TElastix>

elastix::EulerStackTransform< TElastix >::EulerStackTransform ( )

inlineprotected

The constructor.

Definition at line 200 of file elxEulerStackTransform.h.

~EulerStackTransform()

template<typename TElastix>

elastix::EulerStackTransform< TElastix >::~EulerStackTransform ( )

overrideprotecteddefault

The destructor.

Member Function Documentation

BeforeAll()

template<typename TElastix>

int elastix::EulerStackTransform< TElastix >::BeforeAll ( )

overridevirtual

Execute stuff before anything else is done:

Reimplemented from elastix::BaseComponent.

BeforeRegistration()

template<typename TElastix>

void elastix::EulerStackTransform< TElastix >::BeforeRegistration ( )

overridevirtual

Execute stuff before the actual registration:

• Set the stack transform parameters.
• Set initial sub transforms.
• Create initial registration parameters.

Reimplemented from elastix::BaseComponent.

CreateDerivedTransformParameterMap()

template<typename TElastix>

ParameterMapType elastix::EulerStackTransform< TElastix >::CreateDerivedTransformParameterMap ( ) const

overrideprivatevirtual

Creates a map of the parameters specific for this (derived) transform type.

Implements elastix::TransformBase< TElastix >.

elxClassNameMacro()

template<typename TElastix>

elastix::EulerStackTransform< TElastix >::elxClassNameMacro

(

"EulerStackTransform< TElastix >"

)

Name of this class. Use this name in the parameter file to select this specific transform.
example: (Transform "EulerStackTransform")

InitializeEulerTransform()

template<typename TElastix>

unsigned int elastix::EulerStackTransform< TElastix >::InitializeEulerTransform ( )

private

Initialize the affine transform.

InitializeTransform()

template<typename TElastix>

void elastix::EulerStackTransform< TElastix >::InitializeTransform ( )

private

Method initialize the parameters (to 0).

InitialTransformCenter()

template<typename TElastix>

virtual void elastix::EulerStackTransform< TElastix >::InitialTransformCenter ( ReducedDimensionInputPointType & point )

virtual

Function to rotate center of rotation point using initial transformation.

ITK_DISALLOW_COPY_AND_MOVE()

template<typename TElastix>

elastix::EulerStackTransform< TElastix >::ITK_DISALLOW_COPY_AND_MOVE

(

EulerStackTransform< TElastix >

)

itkOverrideGetNameOfClassMacro()

template<typename TElastix>

elastix::EulerStackTransform< TElastix >::itkOverrideGetNameOfClassMacro

(

EulerStackTransform< TElastix >

)

Run-time type information (and related methods).

itkStaticConstMacro() [1/2]

template<typename TElastix>

elastix::EulerStackTransform< TElastix >::itkStaticConstMacro	(	ReducedSpaceDimension	,
		unsigned int	,
		Superclass2::FixedImageDimension -	1 )

itkStaticConstMacro() [2/2]

template<typename TElastix>

elastix::EulerStackTransform< TElastix >::itkStaticConstMacro	(	SpaceDimension	,
		unsigned int	,
		Superclass2::FixedImageDimension	)

(Reduced) dimension of the fixed image.

New()

template<typename TElastix>

Pointer elastix::EulerStackTransform< TElastix >::New ( )

static

Method for creation through the object factory.

ReadCenterOfRotationPoint()

template<typename TElastix>

bool elastix::EulerStackTransform< TElastix >::ReadCenterOfRotationPoint ( ReducedDimensionInputPointType & rotationPoint ) const

private

Try to read the CenterOfRotationPoint from the transform parameter file The CenterOfRotationPoint is already in world coordinates. Transform parameter files generated by elastix version > 3.402 save the center of rotation in this way.

ReadFromFile()

template<typename TElastix>

void elastix::EulerStackTransform< TElastix >::ReadFromFile ( )

overridevirtual

Function to read transform-parameters from a file.

Reimplemented from elastix::TransformBase< TElastix >.

SetScales()

template<typename TElastix>

virtual void elastix::EulerStackTransform< TElastix >::SetScales ( )

virtual

Set the scales

• If AutomaticScalesEstimation is "true" estimate scales
• If scales are provided by the user use those,
• Otherwise use some default value This function is called by BeforeRegistration, after the InitializeTransform function is called

Member Data Documentation

elxOverrideGetSelfMacro

template<typename TElastix>

elastix::EulerStackTransform< TElastix >::elxOverrideGetSelfMacro

private

Definition at line 206 of file elxEulerStackTransform.h.

m_DummySubTransform

template<typename TElastix>

ReducedDimensionEulerTransformPointer elastix::EulerStackTransform< TElastix >::m_DummySubTransform

private

Dummy sub transform to be used to set sub transforms of stack transform.

Definition at line 232 of file elxEulerStackTransform.h.

m_NumberOfSubTransforms

template<typename TElastix>

unsigned int elastix::EulerStackTransform< TElastix >::m_NumberOfSubTransforms

private

Stack variables.

Definition at line 235 of file elxEulerStackTransform.h.

m_StackOrigin

template<typename TElastix>

double elastix::EulerStackTransform< TElastix >::m_StackOrigin

private

Definition at line 236 of file elxEulerStackTransform.h.

m_StackSpacing

template<typename TElastix>

double elastix::EulerStackTransform< TElastix >::m_StackSpacing

private

Definition at line 236 of file elxEulerStackTransform.h.

m_StackTransform

template<typename TElastix>

const StackTransformType::Pointer elastix::EulerStackTransform< TElastix >::m_StackTransform { StackTransformType::New() }

private

The Affine stack transform.

Definition at line 229 of file elxEulerStackTransform.h.